I want to loop over tasks, again and again, until reaching a certain condition before continuing the rest of the workflow. What I have so far is this: But as far as I understand this does not work for multiple tasks. Is there a way to come back further and loop on several tasks at a time ? Answer The
Tag: workflow
How do I write a snakemake input when not all jobs successfully output files from previous rule?
Basically, I have three snakemake rules (other than rule all) and cannot figure this problem out, despite the checkpoint resources. Rule one has my first and only file that I start with. It will have x outputs (the number varies depending on the input file). Each of those x outputs needs to be processed separately in rule 2, meaning that
Optimizing the workflow for Python development using Docker+WSL2
I use different languages on a daily basis and hate it when my machine gets cluttered with many language specific installations/programs/environments. Therefore I’m currently exploring if using Docker+WSL2 as a runtime for my different projects suffices for keeping my host machine clean without too much overhead. My current workflow at the example of Python: Create Python project on host machine