Introduction
I have a lot of Jupyter Notebooks inside a directory and I want to run them all to see them output.
What I actually do
I have to open them each one, click on “Restart kernel and re-run the whole notebook?”, wait a few minutes and then go for the next one.
What I wish to do
Find a way to just “press a button” (it can be a script, command, or everything), go away for a walk, and come back reading what’s the output.
Thanks in advance!
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Answer
You can achieve this with nbconvert
or papermill
.
See also this answer.
This is an example in papermill
:
Installation with Anaconda:
conda install -c conda-forge papermill
Create a new notebook that runs all the notebooks in a specific directory:
import papermill as pm from pathlib import Path for nb in Path('./run_all').glob('*.ipynb'): pm.execute_notebook( input_path=nb, output_path=nb # Path to save executed notebook )