I used the seaborn.regplot to plot data, but not quite understand how the error bar in regplot was calculated. I have compared the results with the mean and standard deviation derived from mannual calculation. Here is my testing script.
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import numpy as np
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import pandas as pd
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import seaborn as sn
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def get_data_XYE(p):
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x_list = []
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lower_list = []
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upper_list = []
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for line in p.lines:
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x_list.append(line.get_xdata()[0])
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lower_list.append(line.get_ydata()[0])
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upper_list.append(line.get_ydata()[1])
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y = 0.5 * (np.asarray(lower_list) + np.asarray(upper_list))
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y_error = np.asarray(upper_list) - y
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x = np.asarray(x_list)
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return x, y, y_error
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x = [37.3448,36.6026,42.7795,34.7072,75.4027,226.2615,192.7984,140.8045,242.9952,458.451,640.6542,726.1024,231.7347,107.5605,200.2254,190.0006,314.1349,146.8131,152.4497,175.9096,284.9926,116.9681,118.2953,312.3787,815.8389,458.0146,409.5797,595.5373,188.9955,15.7716,36.1839,244.8689,57.4579,94.8717,112.2237,87.0687,72.79,22.3457,24.1728,29.505,80.8765,252.7454,280.6002,252.9573,348.246,112.705,98.7545,317.0541,300.9573,402.8411,406.6884,56.1286,30.1385,32.9909,497.556,19.3606,20.8409,95.2324,108.6074,15.7753,54.5511,45.5623,64.564,101.1934,81.8459,88.286,58.2642,56.1225,51.2943,38.0649,63.5882,63.6847,120.495,102.4097,49.3255,111.3309,171.6028,58.9526,28.7698,144.6884,180.0661,116.6028,146.2594,199.8702,128.9378,423.2363,119.8537,124.6508,518.8625,306.3023,79.5213,121.0309,116.9346,170.8863,930.361,48.9983,55.039,47.1092,72.0548,75.4045,103.521,83.4134,142.3253,146.6215,121.4467,101.4252,68.4812,291.4275,143.9475,142.647,78.9826,47.094,204.2196,89.0208,82.792,27.1346,142.4764,83.7874,67.3216,112.9531,138.2549,133.3446,86.2659,45.3464,56.1604,43.5882,54.3623,86.296,115.7272,96.5498,111.8081,36.1756,40.2947,34.2532,89.1452,53.9062,36.458,113.9297,176.9962,77.3125,77.8891,64.807,64.1515,127.7242,119.6876,976.2324,322.8454,434.2883,168.6923,250.0284,234.7329,131.0793,152.335,118.8838,243.1772,24.1776,168.6327,170.7541,167.8444,75.9315,110.1045,113.4417,60.5464,66.8956,79.7606,71.6659,72.5251,77.513,207.8019,21.8592,35.2787,169.7698,146.5012,412.9934,248.0708,318.5489,104.1278,184.7592,108.0581,175.2646,169.7698,340.3732,570.3396,23.9853,69.0405,66.7391,67.9435,294.6085,68.0537,77.6344,433.2713,104.3178,229.4615,187.8587,78.1399,121.4737,122.5451,384.5935,38.5232,117.6835,50.3308,318.2513,103.6695,20.7181,321.9601,510.3248,13.4754,16.1188,44.8082,37.7291,733.4587,446.6241,21.1822,287.9603,327.2367,274.1109,195.4713,158.2114,64.4537,26.9857,172.8503]
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y = [37,40,30,29,24,23,27,12,21,20,29,28,27,32,23,29,28,22,28,23,24,29,32,18,22,12,12,14,29,31,34,31,22,40,25,36,27,27,29,35,33,25,25,27,27,19,35,26,18,24,25,37,52,47,34,39,40,48,41,44,35,36,53,46,38,44,23,26,26,28,27,21,25,21,20,27,35,24,46,34,22,30,30,30,31,26,25,28,21,31,24,27,33,21,31,33,29,33,32,21,25,22,39,31,34,26,23,18,20,18,34,25,20,12,23,25,21,21,25,31,17,27,28,29,25,24,25,21,24,27,23,22,23,22,22,26,22,19,26,35,33,35,29,26,26,30,22,32,33,33,28,32,26,29,36,37,37,28,24,30,25,20,29,24,33,35,30,32,31,33,40,35,37,24,34,29,27,24,36,26,26,26,27,27,20,17,28,34,18,20,20,18,19,23,20,22,25,32,44,41,39,41,40,44,36,42,31,32,26,29,23,29,29,28,31,22,29,24,28,28,25]
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xbreaks = [13.4754, 27.1346, 43.5882, 58.9526, 72.79, 89.1452, 110.1045, 131.0793, 158.2114, 180.0661, 207.8019, 234.7329, 252.9573, 300.9573, 327.2367, 348.246, 412.9934, 434.2883, 458.451, 518.8625, 595.5373, 640.6542, 733.4587, 815.8389, 930.361, 976.2324]
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df = pd.DataFrame([x,y]).T
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df.columns = ['x','y']
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# Check the bin average and std using agge
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bins = pd.cut(df.x,xbreaks,right=False)
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t = df[['x','y']].groupby(bins).agg({"x": "mean", "y": ["mean","std"]})
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t.reset_index(inplace=True)
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t.columns = ['range_cut','x_avg_cut','y_avg_cut','y_std_cut']
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t.index.name ='id'
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# Get the bin average from
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g = sns.regplot(x='x',y='y',data=df,fit_reg=False,x_bins=xbreaks,seed=seed)
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xye = pd.DataFrame(get_data_XYE(g)).T
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xye.columns = ['x_regplot','y_regplot','e_regplot']
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xye.index.name = 'id'
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t2 = xye.merge(t,on='id',how='left')
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t2
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You can see the y and e from the two ways are different. I understand that the default x_ci or x_estimator may afect the result of regplot, but I still can not the these values in excel by removing some lowest and/or highest values in each bin.
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Answer
In seaborn.regplot
, the x_bins are the center of each bin, and the original x values are assigned to the nearest bin value. Whereas in pandas.cut
, the breaks define the bin edges.