I want to know how to use a local directory for wrapper in Snakemake rule.
I have read this Use Github URL for wrapper in Snakemake rule and try follows command
rule index: wrapper: "/public/home/bio/index"
But, I get a stderr with 'NoneType' object has no attribute 'name'
.
Any help is much appreciated. Thanks.
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Answer
It is (slightly hidden) mentioned in the docs.
For an absolute path:
rule index: wrapper: "file://public/home/bio/index"
Or for a relative path:
rule index: wrapper: "file:public/home/bio/index"